Top tabs

Users will be able to switch the contents by clicking those tabs listed below.

1. Main - jump
2. Version 2 - jump
3. Manual - jump
4. About - jump

The possible actions that an user can do will be introduced in the next content.

"Main" Tab

"Main" tab leads an user to main system page, and this tab is selected by default.

"Version" 2 Tab

"Version 2" tab leads an user to previous version of "GALAXY".
The new browser tab will be opend automatically to display that.

"Manual" Tab

"Manual" tab leads an user to system manual page(now you are checking).

"About" Tab

"About" tab leads an user to the document which describes the detail about the research background.

Control panel

Upper panel

-Axis type

An user will be able to select axis type of the graph at the middle.
These are the available options.

1. ODS - Amide
2. ODS - Molecular Weight(Mw)
3. Amide - Mw

-Sialic acid

An user will be able to filter the data by sialic acid.
It will consider the content of "N-Acetylneuraminic acid" and "N-Glycolylneuraminic acid".
The form will accept these string patterns.

• x → limited its value as x
• x- → limited its value as over x
• -x → limited its value as below x
• x-y → limited its value between x and y

-Glucuronic acid

An user will be able to filter the data by glucuronic acid.
It will consider the content of "D-Glucopyranuronic acid".
The form will accept these string patterns.

• x → limited its value as x
• x- → limited its value as over x
• -x → limited its value as below x
• x-y → limited its value between x and y

-Sulfate

An user will be able to filter the data by sulfation.
It will consider the content of "6-O-sulfate"(6S).
The form will accept these string patterns.

• x → limited its value as x
• x- → limited its value as over x
• -x → limited its value as below x
• x-y → limited its value between x and y

-Utilities

The system has two useful functions.

1. Reset
2. Last

Reset

Once this function is called, all form will be cleared and the graph will be generated with original data again.

Last

UNDER DEVELOPMENT

Lower panel

※タブ切り替えのGif挿入

-Axis

The axis form will accept four values at one time.
Only the forms corresponding to the selected axis type are fillable.
Respective "Value" specifies standard value, and "Range" accepts margin.
For example, if 10 is given for ODS value and 1 is given for ODS range, the system will filter data which ODS value is 9 - 11.

-Tree

An user can open tree map at external window like the image above.
The procedure of tree search is following these orders.

1. Select search mode from "Fit" or "Fuzzy"
• Fit: limits the plot which matches completely the same as the selected structure
• Fuzzy: limits the plots which contains the selected structure
※User will be able to switch the search mode from the bottom menu later as well. ※Filtering will be re-proceeded with the selecting nodes information.
2. Select the node(s)
Selected nodes will turn to skyblue background.
3. Save selection(optional))
4. Restore(optional)
※"Restore" works when the previous selection is saved on the server.

-Composition

Composition search form accepts numbers of each monosaccharide.
The forms will not be appeared unless an user will check the box next to the category name.
※Even numbers are filled in the forms, the system will reffer condition of a checked monosaccharide.
"Composition search" also has two search mode.

• Fit: limits the plots which matche completely the same composition as designated.
• Fuzzy: limits the plots which contains the designated number of each monosaccharide.

-Code

An user will be able to search by code.
The code list is available from this link(download CSV).
※The code is determined by following the rule described here.

-Source

UNDER DEVELOPMENT

Graph area

Experimental switch

An user will be able to switch whether displaying "Experimental dataset" on the graph or not.

Inferred switch

An user will be able to switch whether displaying "Inferred dataset" on the graph or not.

Plot area

Plot area displays data by two dimentional graph.
There are some features for this area.

1. Selecting plot to show more information in the result area
2. Checking general information by hovering mouse on a plot(as showed on image above)
3. Zooming out/in by using mouse wheel or multi fingers(on tablet)
4. Panning the graph

Plot color

Plots are colored by one of those below.

• : Experimental dataset(default)
• : Inferred dataset(default)
• : Single selected plot
• : Filtered plots
• : Tab selected plot(among filtered plots)

Border color

Plot border is colored by one of those colors when enzyme relation is highlihgted.

• : α-Galactosidase
• : α-Fucosidase
• : β-Galactosidase
• : β-HexNAcase
• : β-Xylosidase
• : α-Sialidase
• : α-Glucuronidase
• : Desulfation

Range information

Range information table is placed under the graph.
The table shows the brief information of genral parameters in the format below.
"minimum - maximum"
The data is separated by the dataset type.

Highlight

GlyTouCan ID

Mapped GlyTouCan ID is displayed on the top of the result area.
Target link is opened at an external tab on your web browser.
※What is GlyTouCan?

Glycan Image

Glycan Image is generated with Symbol Nomenclature for Glycans(SNFG).

Enzyme

Eight kinds of enzyme are listed in the table, and all of them are clickable if the glycan has product or substrate.
The clicking will highlight those product or substrate on the graph with a style described here.
Example highlight is looked like the figure below.

Product

If a glycan has a product by processing with an enzyme, its GlyTouCan ID would be appeared as a botton.
By hovering the cursor on the botton, an user will be able to check the glycan image.

Moreover, clicking the botton triggers showing up of the modal window for checking more information briefly.

Substrate

If a glycan has a substrate by processing with an enzyme, its GlyTouCan ID would be collected in a drop-down button.
After opening the drop-down, by hovering the cursor on the GlyTouCan ID, an user will be able to check the glycan image.
Moreover, clicking the botton triggers showing up of the modal window for checking more information briefly.
Those features are the same as described in the product section.